IL_5O61_180

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_180 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3335

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5O61|1|BA|C|1240
5O61|1|BA|G|1241
5O61|1|BA|A|1242
5O61|1|BA|U|1243
5O61|1|BA|G|1244
*
5O61|1|BA|U|1253
5O61|1|BA|G|1254
5O61|1|BA|G|1255
5O61|1|BA|A|1256
5O61|1|BA|G|1257

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BS

30S ribosomal protein S19