IL_5O61_185

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5O61|1|BA|A|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_185 not in the Motif Atlas

Geometric match to IL_5T3K_001

Geometric discrepancy: 0.3206

The information below is about IL_5T3K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5O61|1|BA|C|1390
5O61|1|BA|A|1391
5O61|1|BA|C|1392
*
5O61|1|BA|G|1475
5O61|1|BA|A|1476
5O61|1|BA|A|1477
5O61|1|BA|G|1478

Current chains

Chain BA

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Conserved domain protein

Chain BL

30S ribosomal protein S12