IL_5O9Z_013
3D structure
- PDB id
- 5O9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAU*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O9Z_013 not in the Motif Atlas
- Geometric match to IL_5CCB_001
- Geometric discrepancy: 0.1753
- The information below is about IL_5CCB_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
5O9Z|1|6|G|38
5O9Z|1|6|A|39
5O9Z|1|6|U|40
*
5O9Z|1|Y|G|65
5O9Z|1|Y|C|66
5O9Z|1|Y|C|67
Current chains
- Chain 6
- Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA
- Chain Y
- MINX pre-mRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain N
- Zinc finger matrin-type protein 2
- Chain Q
- WW domain-binding protein 4
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