IL_5OA3_014

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5OA3|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1324

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5OA3|1|2|G|145
5OA3|1|2|G|146
5OA3|1|2|A|147
5OA3|1|2|U|148
5OA3|1|2|A|149
5OA3|1|2|A|150
5OA3|1|2|C|151
*
5OA3|1|2|G|167
5OA3|1|2|C|168
5OA3|1|2|U|169
5OA3|1|2|A|170
5OA3|1|2|A|171
5OA3|1|2|U|172
5OA3|1|2|A|173
5OA3|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24