IL_5OA3_030

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

5OA3|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_030 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2805

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5OA3|1|2|G|563
5OA3|1|2|A|564
5OA3|1|2|G|565
*
5OA3|1|2|C|585
5OA3|1|2|G|586
5OA3|1|2|A|587
5OA3|1|2|G|588
5OA3|1|2|G|589
5OA3|1|2|A|590
5OA3|1|2|U|591
5OA3|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30