IL_5OA3_032

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_032 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.1137

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5OA3|1|2|A|599
5OA3|1|2|G|600
5OA3|1|2|G|601
5OA3|1|2|G|602
5OA3|1|2|C|603
5OA3|1|2|A|604
5OA3|1|2|A|605
5OA3|1|2|G|606
*
5OA3|1|2|C|636
5OA3|1|2|U|637

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30