IL_5OA3_050

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

5OA3|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_050 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.242

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5OA3|1|2|G|952
5OA3|1|2|C|953
5OA3|1|2|U|954
5OA3|1|2|A|955
5OA3|1|2|G|956
*
5OA3|1|2|C|967
5OA3|1|2|U|968
5OA3|1|2|U|969
5OA3|1|2|G|970
5OA3|1|2|G|971
5OA3|1|2|A|972
5OA3|1|2|C|973
5OA3|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 2D

Chain B

40S ribosomal protein S3a

Chain O

40S ribosomal protein S14