IL_5OA3_057

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_057 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0921

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5OA3|1|2|G|1168
5OA3|1|2|G|1169
5OA3|1|2|A|1170
5OA3|1|2|G|1171
5OA3|1|2|U|1172
5OA3|1|2|A|1173
5OA3|1|2|U|1174
5OA3|1|2|G|1175
*
5OA3|1|2|U|1186
5OA3|1|2|G|1187
5OA3|1|2|A|1188
5OA3|1|2|A|1189
5OA3|1|2|A|1190
5OA3|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

RIBOSOMAL PROTEIN EL41