IL_5OA3_080

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5OA3|1|2|C|1701, 5OA3|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_080 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1111

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5OA3|1|2|C|1700
5OA3|1|2|C|1701
5OA3|1|2|G|1702
*
5OA3|1|2|C|1833
5OA3|1|2|A|1834
5OA3|1|2|A|1835
5OA3|1|2|G|1836

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

Internal ribosome entry site; IRES

Chain a

40S ribosomal protein S26