IL_5OA3_083

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

5OA3|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OA3_083 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3935

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5OA3|1|2|C|1708
5OA3|1|2|G|1709
5OA3|1|2|C|1710
5OA3|1|2|U|1711
*
5OA3|1|2|A|1822
5OA3|1|2|A|1823
5OA3|1|2|A|1824
5OA3|1|2|A|1825
5OA3|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 2D

Chain X

40S ribosomal protein S23

Chain h

RIBOSOMAL PROTEIN EL41