IL_5OBM_144
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5OBM|1|2|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_144 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1128
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5OBM|1|2|G|143
5OBM|1|2|U|144
5OBM|1|2|A|145
5OBM|1|2|U|146
5OBM|1|2|A|147
5OBM|1|2|A|148
5OBM|1|2|C|149
*
5OBM|1|2|G|165
5OBM|1|2|C|166
5OBM|1|2|U|167
5OBM|1|2|A|168
5OBM|1|2|A|169
5OBM|1|2|U|170
5OBM|1|2|A|171
5OBM|1|2|C|172
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D4
- 40S ribosomal protein S24-A
- Chain N4
- 60S ribosomal protein L24-A
- Chain S6
- 40S ribosomal protein S6-A
- Chain S8
- 40S ribosomal protein S8-A
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