IL_5OBM_297

3D structure

PDB id

5OBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Gentamicin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

5OBM|1|5|U|1820, 5OBM|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OBM_297 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2131

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5OBM|1|5|G|1623
5OBM|1|5|G|1624
*
5OBM|1|5|U|1819
5OBM|1|5|U|1820
5OBM|1|5|U|1821
5OBM|1|5|C|1822

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o4

60S ribosomal protein L34-A

Chain o8

60S ribosomal protein L38