IL_5OBM_308
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5OBM|1|5|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_308 not in the Motif Atlas
- Homologous match to IL_5TBW_077
- Geometric discrepancy: 0.0728
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5OBM|1|5|A|1901
5OBM|1|5|G|1902
5OBM|1|5|U|1903
5OBM|1|5|C|1904
5OBM|1|5|G|1905
5OBM|1|5|G|1906
*
5OBM|1|5|C|2333
5OBM|1|5|U|2334
5OBM|1|5|G|2335
5OBM|1|5|U|2336
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain n3
- 60S ribosomal protein L23-A
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