IL_5OBM_318
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 5OBM|1|5|A|2281, 5OBM|1|5|C|2287, 5OBM|1|5|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_318 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0893
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5OBM|1|5|C|2277
5OBM|1|5|C|2278
5OBM|1|5|A|2279
5OBM|1|5|A|2280
5OBM|1|5|A|2281
5OBM|1|5|U|2282
5OBM|1|5|G|2283
5OBM|1|5|C|2284
5OBM|1|5|C|2285
5OBM|1|5|U|2286
5OBM|1|5|C|2287
5OBM|1|5|G|2288
*
5OBM|1|5|C|2304
5OBM|1|5|G|2305
5OBM|1|5|C|2306
5OBM|1|5|G|2307
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain q1
- 60S ribosomal protein L41-A
Coloring options: