IL_5OBM_409
3D structure
- PDB id
- 5OBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Gentamicin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUCAG*CUUGGAUU
- Length
- 13 nucleotides
- Bulged bases
- 5OBM|1|6|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OBM_409 not in the Motif Atlas
- Geometric match to IL_4V88_434
- Geometric discrepancy: 0.1021
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
5OBM|1|6|G|895
5OBM|1|6|U|896
5OBM|1|6|C|897
5OBM|1|6|A|898
5OBM|1|6|G|899
*
5OBM|1|6|C|910
5OBM|1|6|U|911
5OBM|1|6|U|912
5OBM|1|6|G|913
5OBM|1|6|G|914
5OBM|1|6|A|915
5OBM|1|6|U|916
5OBM|1|6|U|917
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c4
- 40S ribosomal protein S14-B
- Chain s1
- 40S ribosomal protein S1-A
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