IL_5ON6_141
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 5ON6|1|3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_141 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0601
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5ON6|1|3|A|72
5ON6|1|3|C|73
5ON6|1|3|C|74
5ON6|1|3|G|75
5ON6|1|3|A|76
5ON6|1|3|G|77
5ON6|1|3|U|78
5ON6|1|3|A|79
5ON6|1|3|G|80
*
5ON6|1|3|C|100
5ON6|1|3|G|101
5ON6|1|3|A|102
5ON6|1|3|A|103
5ON6|1|3|A|104
5ON6|1|3|C|105
5ON6|1|3|U|106
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20-A
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L10
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