IL_5ON6_157

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_157 not in the Motif Atlas

Homologous match to IL_4V88_395

Geometric discrepancy: 0.0708

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5ON6|1|6|U|150
5ON6|1|6|G|151
5ON6|1|6|U|152
*
5ON6|1|6|A|162
5ON6|1|6|G|163
5ON6|1|6|A|164

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s6

40S ribosomal protein S6-A