IL_5ON6_245

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5ON6|1|A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_245 not in the Motif Atlas

Geometric match to IL_4V88_394

Geometric discrepancy: 0.1045

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5ON6|1|A|G|143
5ON6|1|A|U|144
5ON6|1|A|A|145
5ON6|1|A|U|146
5ON6|1|A|A|147
5ON6|1|A|A|148
5ON6|1|A|C|149
*
5ON6|1|A|G|165
5ON6|1|A|C|166
5ON6|1|A|U|167
5ON6|1|A|A|168
5ON6|1|A|A|169
5ON6|1|A|U|170
5ON6|1|A|A|171
5ON6|1|A|C|172

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain H

40S ribosomal protein S6-A

Chain Z

40S ribosomal protein S24-A