IL_5ON6_388

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

5ON6|1|AR|U|1629, 5ON6|1|AR|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_388 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.1522

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5ON6|1|AR|U|1627
5ON6|1|AR|C|1628
5ON6|1|AR|U|1629
5ON6|1|AR|U|1630
5ON6|1|AR|C|1631
*
5ON6|1|AR|G|1811
5ON6|1|AR|G|1812
5ON6|1|AR|A|1813
5ON6|1|AR|A|1814
5ON6|1|AR|U|1815
5ON6|1|AR|A|1816

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L27-A