IL_5ON6_412

3D structure

PDB id

5ON6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of haemanthamine bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5ON6|1|AR|A|2281, 5ON6|1|AR|C|2287, 5ON6|1|AR|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ON6_412 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0545

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5ON6|1|AR|C|2277
5ON6|1|AR|C|2278
5ON6|1|AR|A|2279
5ON6|1|AR|A|2280
5ON6|1|AR|A|2281
5ON6|1|AR|U|2282
5ON6|1|AR|G|2283
5ON6|1|AR|C|2284
5ON6|1|AR|C|2285
5ON6|1|AR|U|2286
5ON6|1|AR|C|2287
5ON6|1|AR|G|2288
*
5ON6|1|AR|C|2304
5ON6|1|AR|G|2305
5ON6|1|AR|C|2306
5ON6|1|AR|G|2307

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain DP

60S ribosomal protein L41-B