IL_5ON6_446
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5ON6|1|AR|A|3180, 5ON6|1|AR|A|3186, 5ON6|1|AR|U|3207, 5ON6|1|AR|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_446 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.076
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5ON6|1|AR|U|3179
5ON6|1|AR|A|3180
5ON6|1|AR|C|3181
5ON6|1|AR|G|3182
5ON6|1|AR|A|3183
5ON6|1|AR|A|3184
5ON6|1|AR|U|3185
5ON6|1|AR|A|3186
5ON6|1|AR|A|3187
5ON6|1|AR|G|3188
*
5ON6|1|AR|C|3204
5ON6|1|AR|G|3205
5ON6|1|AR|C|3206
5ON6|1|AR|U|3207
5ON6|1|AR|G|3208
5ON6|1|AR|A|3209
5ON6|1|AR|A|3210
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CH
- 60S ribosomal protein L6-A
- Chain CK
- 60S ribosomal protein L9-A
- Chain CO
- 60S ribosomal protein L14-A
- Chain CQ
- 60S ribosomal protein L16-A
- Chain CU
- 60S ribosomal protein L20-A
- Chain DH
- 60S ribosomal protein L33-A
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