IL_5ON6_488
3D structure
- PDB id
- 5ON6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of haemanthamine bound to the 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 5ON6|1|A|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ON6_488 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.3262
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5ON6|1|A|U|893
5ON6|1|A|U|894
5ON6|1|A|G|895
5ON6|1|A|U|896
5ON6|1|A|C|897
5ON6|1|A|A|898
5ON6|1|A|G|899
*
5ON6|1|A|C|910
5ON6|1|A|U|911
5ON6|1|A|U|912
5ON6|1|A|G|913
5ON6|1|A|G|914
5ON6|1|A|A|915
5ON6|1|A|U|916
5ON6|1|A|U|917
5ON6|1|A|U|918
5ON6|1|A|A|919
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 40S ribosomal protein S1-A
- Chain P
- 40S ribosomal protein S14-B
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