IL_5OOL_032

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAUAAUCACUUG*CCUG

Length

16 nucleotides

Bulged bases

5OOL|1|A|A|2601, 5OOL|1|A|U|2607, 5OOL|1|A|U|2626

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_032 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.5849

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

5OOL|1|A|C|2597
5OOL|1|A|A|2598
5OOL|1|A|U|2599
5OOL|1|A|A|2600
5OOL|1|A|A|2601
5OOL|1|A|U|2602
5OOL|1|A|C|2603
5OOL|1|A|A|2604
5OOL|1|A|C|2605
5OOL|1|A|U|2606
5OOL|1|A|U|2607
5OOL|1|A|G|2608
*
5OOL|1|A|C|2624
5OOL|1|A|C|2625
5OOL|1|A|U|2626
5OOL|1|A|G|2627

Current chains

Chain A

16S ribosomal RNA

Nearby chains