IL_5OOL_049

3D structure

PDB id

5OOL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CCG*UAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOL_049 not in the Motif Atlas

Geometric match to IL_7EL1_001

Geometric discrepancy: 0.3945

The information below is about IL_7EL1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

5OOL|1|A|C|3008
5OOL|1|A|C|3009
5OOL|1|A|G|3010
*
5OOL|1|A|U|3027
5OOL|1|A|A|3028
5OOL|1|A|A|3029
5OOL|1|A|A|3030
5OOL|1|A|G|3031

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain K

39S ribosomal protein L13, mitochondrial

Chain r

39S ribosomal protein S18a, mitochondrial