IL_5OOM_012

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GAG*CUACC

Length

8 nucleotides

Bulged bases

5OOM|1|A|A|1986, 5OOM|1|A|U|1998, 5OOM|1|A|A|1999, 5OOM|1|A|C|2000

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OOM_012 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.1275

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

5OOM|1|A|G|1985
5OOM|1|A|A|1986
5OOM|1|A|G|1987
*
5OOM|1|A|C|1997
5OOM|1|A|U|1998
5OOM|1|A|A|1999
5OOM|1|A|C|2000
5OOM|1|A|C|2001

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial