IL_5OOM_014
3D structure
- PDB id
- 5OOM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCCACAG*CCCCUUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OOM_014 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.2482
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5OOM|1|A|C|2057
5OOM|1|A|C|2058
5OOM|1|A|C|2059
5OOM|1|A|A|2060
5OOM|1|A|C|2061
5OOM|1|A|A|2062
5OOM|1|A|G|2063
*
5OOM|1|A|C|2076
5OOM|1|A|C|2077
5OOM|1|A|C|2078
5OOM|1|A|C|2079
5OOM|1|A|U|2080
5OOM|1|A|U|2081
5OOM|1|A|G|2082
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: