IL_5OOM_038

3D structure

PDB id

5OOM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AUCUACAAUCAACCAAC*GUCAUU

Length

23 nucleotides

Bulged bases

5OOM|1|A|C|2393, 5OOM|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5OOM|1|A|A|2384
5OOM|1|A|U|2385
5OOM|1|A|C|2386
5OOM|1|A|U|2387
5OOM|1|A|A|2388
5OOM|1|A|C|2389
5OOM|1|A|A|2390
5OOM|1|A|A|2391
5OOM|1|A|U|2392
5OOM|1|A|C|2393
5OOM|1|A|A|2394
5OOM|1|A|A|2395
5OOM|1|A|C|2396
5OOM|1|A|C|2397
5OOM|1|A|A|2398
5OOM|1|A|A|2399
5OOM|1|A|C|2400
*
5OOM|1|A|G|2403
5OOM|1|A|U|2404
5OOM|1|A|C|2405
5OOM|1|A|A|2406
5OOM|1|A|U|2407
5OOM|1|A|U|2408

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial