IL_5OPT_002
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCAAG*CGAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5OPT|1|E|A|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_002 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.2063
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5OPT|1|E|U|37
5OPT|1|E|C|38
5OPT|1|E|A|39
5OPT|1|E|A|40
5OPT|1|E|G|41
*
5OPT|1|E|C|518
5OPT|1|E|G|519
5OPT|1|E|A|520
5OPT|1|E|A|521
5OPT|1|E|A|522
5OPT|1|E|A|523
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain b
- 40S ribosomal protein S9, putative
Coloring options: