IL_5OPT_003
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GACUUAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 5OPT|1|E|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_003 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.2841
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|G|42
5OPT|1|E|A|43
5OPT|1|E|C|44
5OPT|1|E|U|45
5OPT|1|E|U|46
5OPT|1|E|A|47
5OPT|1|E|G|48
*
5OPT|1|E|C|478
5OPT|1|E|G|479
5OPT|1|E|C|480
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain b
- 40S ribosomal protein S9, putative
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