IL_5OPT_011

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5OPT|1|E|U|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1269

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5OPT|1|E|G|147
5OPT|1|E|G|148
5OPT|1|E|A|149
5OPT|1|E|U|150
5OPT|1|E|A|151
5OPT|1|E|A|152
5OPT|1|E|C|153
*
5OPT|1|E|G|169
5OPT|1|E|C|170
5OPT|1|E|U|171
5OPT|1|E|A|172
5OPT|1|E|A|173
5OPT|1|E|U|174
5OPT|1|E|A|175
5OPT|1|E|C|176

Current chains

Chain E

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24