IL_5OPT_026

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGACAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_026 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1172

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5OPT|1|E|A|604
5OPT|1|E|G|605
5OPT|1|E|G|606
5OPT|1|E|A|607
5OPT|1|E|C|608
5OPT|1|E|A|609
5OPT|1|E|A|610
5OPT|1|E|G|611
*
5OPT|1|E|C|641
5OPT|1|E|U|642

Current chains

Chain E

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S9, putative

Chain c

40S ribosomal protein S30

Chain d

40S ribosomal protein S2, putative