IL_5OPT_038
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AC*GGAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_038 not in the Motif Atlas
- Homologous match to IL_4V88_423
- Geometric discrepancy: 0.2351
- The information below is about IL_4V88_423
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
5OPT|1|E|A|852
5OPT|1|E|C|853
*
5OPT|1|E|G|908
5OPT|1|E|G|909
5OPT|1|E|A|910
5OPT|1|E|U|911
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain Q
- Ribosomal protein S7, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain e
- 40S ribosomal protein S15a, putative
Coloring options: