IL_5OPT_039
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GACUAAAAA*UAGAAAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_039 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2584
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|G|857
5OPT|1|E|A|858
5OPT|1|E|C|859
5OPT|1|E|U|860
5OPT|1|E|A|861
5OPT|1|E|A|862
5OPT|1|E|A|863
5OPT|1|E|A|864
5OPT|1|E|A|865
*
5OPT|1|E|U|897
5OPT|1|E|A|898
5OPT|1|E|G|899
5OPT|1|E|A|900
5OPT|1|E|A|901
5OPT|1|E|A|902
5OPT|1|E|G|903
5OPT|1|E|C|904
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain L
- 40S ribosomal protein S4
- Chain X
- 40S ribosomal protein S11, putative
- Chain b
- 40S ribosomal protein S9, putative
Coloring options: