IL_5OPT_040

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCUG*CAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_040 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.2594

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5OPT|1|E|C|926
5OPT|1|E|U|927
5OPT|1|E|C|928
5OPT|1|E|U|929
5OPT|1|E|G|930
*
5OPT|1|E|C|966
5OPT|1|E|A|967
5OPT|1|E|U|968
5OPT|1|E|U|969
5OPT|1|E|G|970

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative