IL_5OPT_042

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAAU*GCCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_042 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2106

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5OPT|1|E|A|1086
5OPT|1|E|A|1087
5OPT|1|E|A|1088
5OPT|1|E|U|1089
*
5OPT|1|E|G|1165
5OPT|1|E|C|1166
5OPT|1|E|C|1167
5OPT|1|E|U|1168

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative