IL_5OPT_043

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAG*UCCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_043 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.3667

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

5OPT|1|E|G|1199
5OPT|1|E|A|1200
5OPT|1|E|G|1201
*
5OPT|1|E|U|1296
5OPT|1|E|C|1297
5OPT|1|E|C|1298
5OPT|1|E|U|1299
5OPT|1|E|C|1300

Current chains

Chain E

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S13, putative

Chain S

40S ribosomal protein S27, putative

Chain e

40S ribosomal protein S15a, putative