IL_5OPT_044

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGG*CCUU

Length

7 nucleotides

Bulged bases

5OPT|1|E|C|1294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_044 not in the Motif Atlas

Geometric match to IL_4E5C_001

Geometric discrepancy: 0.2589

The information below is about IL_4E5C_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5OPT|1|E|G|1201
5OPT|1|E|G|1202
5OPT|1|E|G|1203
*
5OPT|1|E|C|1293
5OPT|1|E|C|1294
5OPT|1|E|U|1295
5OPT|1|E|U|1296

Current chains

Chain E

18S rRNA

Nearby chains

Chain Q

Ribosomal protein S7, putative

Chain R

40S ribosomal protein S13, putative

Chain S

40S ribosomal protein S27, putative