IL_5OPT_047

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUACU*AAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_047 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3834

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5OPT|1|E|G|1220
5OPT|1|E|U|1221
5OPT|1|E|A|1222
5OPT|1|E|C|1223
5OPT|1|E|U|1224
*
5OPT|1|E|A|1258
5OPT|1|E|A|1259
5OPT|1|E|G|1260
5OPT|1|E|A|1261
5OPT|1|E|C|1262

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26

Chain V

40S ribosomal protein S14, putative

Chain W

40S ribosomal protein S3a-2