IL_5OPT_048

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUCAG*CUUAGACC

Length

13 nucleotides

Bulged bases

5OPT|1|E|A|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_048 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1789

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5OPT|1|E|G|1230
5OPT|1|E|U|1231
5OPT|1|E|C|1232
5OPT|1|E|A|1233
5OPT|1|E|G|1234
*
5OPT|1|E|C|1245
5OPT|1|E|U|1246
5OPT|1|E|U|1247
5OPT|1|E|A|1248
5OPT|1|E|G|1249
5OPT|1|E|A|1250
5OPT|1|E|C|1251
5OPT|1|E|C|1252

Current chains

Chain E

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S14, putative

Chain W

40S ribosomal protein S3a-2