IL_5OPT_051
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAC*GUUACAG
- Length
- 10 nucleotides
- Bulged bases
- 5OPT|1|E|U|1564, 5OPT|1|E|A|1566, 5OPT|1|E|A|1568
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_051 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.189
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5OPT|1|E|C|1369
5OPT|1|E|A|1370
5OPT|1|E|C|1371
*
5OPT|1|E|G|1563
5OPT|1|E|U|1564
5OPT|1|E|U|1565
5OPT|1|E|A|1566
5OPT|1|E|C|1567
5OPT|1|E|A|1568
5OPT|1|E|G|1569
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain M
- 40S ribosomal protein S23, putative
- Chain R
- 40S ribosomal protein S13, putative
- Chain S
- 40S ribosomal protein S27, putative
- Chain X
- 40S ribosomal protein S11, putative
- Chain d
- 40S ribosomal protein S2, putative
- Chain e
- 40S ribosomal protein S15a, putative
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