IL_5OPT_052
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUU*GACU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_052 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3654
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32983.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5OPT|1|E|A|1378
5OPT|1|E|U|1379
5OPT|1|E|U|1380
*
5OPT|1|E|G|1538
5OPT|1|E|A|1539
5OPT|1|E|C|1540
5OPT|1|E|U|1541
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain R
- 40S ribosomal protein S13, putative
- Chain S
- 40S ribosomal protein S27, putative
- Chain T
- 40S ribosomal protein S26
- Chain W
- 40S ribosomal protein S3a-2
- Chain f
- 40S ribosomal protein SA
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