IL_5OPT_054

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1065

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|G|1579
5OPT|1|E|G|1580
5OPT|1|E|A|1581
5OPT|1|E|G|1582
5OPT|1|E|U|1583
5OPT|1|E|A|1584
5OPT|1|E|C|1585
5OPT|1|E|G|1586
*
5OPT|1|E|U|1597
5OPT|1|E|G|1598
5OPT|1|E|A|1599
5OPT|1|E|A|1600
5OPT|1|E|A|1601
5OPT|1|E|C|1602

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative