IL_5OPT_058
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAGA*UCUGG
- Length
- 9 nucleotides
- Bulged bases
- 5OPT|1|E|C|1966
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_058 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2897
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5OPT|1|E|C|1678
5OPT|1|E|A|1679
5OPT|1|E|G|1680
5OPT|1|E|A|1681
*
5OPT|1|E|U|1965
5OPT|1|E|C|1966
5OPT|1|E|U|1967
5OPT|1|E|G|1968
5OPT|1|E|G|1969
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain j
- Ubiquitin/ribosomal protein S27a, putative
- Chain n
- 40S ribosomal protein S10, putative
- Chain q
- Ribosomal protein S29, putative
- Chain t
- 40S ribosomal protein S15, putative
Coloring options: