IL_5OPT_062
3D structure
- PDB id
- 5OPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of KSRP in context of Trypanosoma cruzi 40S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 5OPT|1|E|A|1942
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OPT_062 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.2272
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
5OPT|1|E|C|1748
5OPT|1|E|G|1749
*
5OPT|1|E|C|1941
5OPT|1|E|A|1942
5OPT|1|E|G|1943
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain d
- 40S ribosomal protein S2, putative
- Chain l
- Ribosomal protein S20, putative
- Chain m
- 40S ribosomal protein S3, putative
- Chain q
- Ribosomal protein S29, putative
- Chain r
- 40S ribosomal protein S16, putative
Coloring options: