IL_5OPT_065

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUA*UUCU

Length

8 nucleotides

Bulged bases

5OPT|1|E|G|1813, 5OPT|1|E|U|1814

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_065 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1826

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5OPT|1|E|A|1812
5OPT|1|E|G|1813
5OPT|1|E|U|1814
5OPT|1|E|A|1815
*
5OPT|1|E|U|1892
5OPT|1|E|U|1893
5OPT|1|E|C|1894
5OPT|1|E|U|1895

Current chains

Chain E

18S rRNA

Nearby chains

Chain l

Ribosomal protein S20, putative

Chain p

Activated protein kinase C receptor, putative

Chain r

40S ribosomal protein S16, putative