IL_5OPT_066

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGCG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_066 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1615

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5OPT|1|E|C|1851
5OPT|1|E|G|1852
5OPT|1|E|C|1853
5OPT|1|E|G|1854
*
5OPT|1|E|C|1864
5OPT|1|E|A|1865
5OPT|1|E|A|1866
5OPT|1|E|G|1867

Current chains

Chain E

18S rRNA

Nearby chains