IL_5OPT_070

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5OPT|1|E|C|2171, 5OPT|1|E|A|2284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_070 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1031

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5OPT|1|E|C|2170
5OPT|1|E|C|2171
5OPT|1|E|G|2172
*
5OPT|1|E|C|2282
5OPT|1|E|A|2283
5OPT|1|E|A|2284
5OPT|1|E|G|2285

Current chains

Chain E

18S rRNA

Nearby chains

Chain T

40S ribosomal protein S26