IL_5OPT_073

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGU*AAAG

Length

7 nucleotides

Bulged bases

5OPT|1|E|A|2274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_073 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2122

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5OPT|1|E|C|2178
5OPT|1|E|G|2179
5OPT|1|E|U|2180
*
5OPT|1|E|A|2272
5OPT|1|E|A|2273
5OPT|1|E|A|2274
5OPT|1|E|G|2275

Current chains

Chain E

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S23, putative