IL_5OPT_074

3D structure

PDB id

5OPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of KSRP in context of Trypanosoma cruzi 40S

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5OPT_074 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1327

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5OPT|1|E|C|2187
5OPT|1|E|G|2188
5OPT|1|E|A|2189
5OPT|1|E|U|2190
*
5OPT|1|E|A|2262
5OPT|1|E|G|2263
5OPT|1|E|A|2264
5OPT|1|E|G|2265

Current chains

Chain E

18S rRNA

Nearby chains