IL_5OQL_008
3D structure
- PDB id
- 5OQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CACC*GAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5OQL_008 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.2905
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5OQL|1|1|C|137
5OQL|1|1|A|138
5OQL|1|1|C|139
5OQL|1|1|C|140
*
5OQL|1|1|G|198
5OQL|1|1|A|199
5OQL|1|1|A|200
5OQL|1|1|G|201
Current chains
- Chain 1
- 35S rRNA
Nearby chains
- Chain D
- Utp4
- Chain H
- U3 small nucleolar RNA-associated protein 11
- Chain N
- Utp18
- Chain V
- Snu13
Coloring options: